Kids in these fics have Scully or Mulder, or Doggett or Reyes as parents. These are just kids from deliberate relationships, ftr.

Other is an Original Character

Scully

Air Conditioning by Acidrain23
Bathrooms and Other Benefits by Sara B
Bathrooms and Other Benefits 2: More Benefits by Sara B
Bathrooms and Other Benefits 3: Beneficial Dividends by Sara B
Birth Day by Siobhan Gormley
Could've Been RogueAngel
Daddy by Grey Woman
The Devotion Series by Sarah, Sophia, Quetzel, & Lady X
If by Ewa
If Only I by Ewa
In One Day by LJP
The Long Trail Home by Nantglyn
Moms Only Chat by Megan
A Mother's Secrets by Chrissie
Portrait of a Family by Lilith
Seed by Cathey Scully
Surprise by Chloe Durlem
Tangled by Kristy Anderson
Whatever We Become (Seed II) by Cathey Scully
A Wonderful Life part 1 part 2 by Donna

Mulder

Annabelle Series Elizabeth L. Iacono
Children by Alicia Ann
The Dangerous Side Effects of Body Switching by Jeri
David part one by part two by Gerry Hill
Daughter of Mine by bellefleur
Four Corners Cycle by Spookey247
The Girl With My Sister's Face by Henle Girl
Jurassic Files by Bruce C and Angelia D
Killing Season by Sharon Harkins-Murphy
Katelyn I. Family by Toma
Katelyn II. The Return of Trouble by Toma & Kelley E. Kelly
The Long Trail Home by Nantglyn
Lost Child by Amperage
Lost Childhood by Shorts
Marry Our Fortunes by Alicia K
Megan by Gilly-Bean
Megan II: I Don't Know by Gilly-Bean
Moms Only Chat by Megan
Once Upon a Time: Welcome Home by Meaghan McScully
Once Upon a Time: Against All Odds by Meaghan McScully
Once Upon A Time: Reunited by Meaghan McScully
Only Because He Needed Us & Broken Mosaic by Neoxphile
Promises by Phenyx
Sarah by Mystic Kat
Second Chance by SupernaturalAngel
Tangency by Heather B
The White Picket Fences Series by Batela(also m/m slash)

Scully/Skinner

Adopted Son by Kel
...and Baby Makes Six! by Skinner's Vieja
After William by Philiater
Archangel by Philiater
It's Only Ever Been You by kimo-sabe
Greatest Gift of All by Kris
Love and Lovers by Donna
new ficNovember Eleventh by Lisby
Offspring part 1 pt 2 pt 3 pt 4 pt 5 by Deslea R. Judd
Promises to Keep by Prufrock's Love
The Reoccurring Nightmare III - Cheating Fate by Lady Disdain
Wonderland Lodge by Kristen
A Wonderland Life by Kristen
A Wonderland Life 2 by Kristen
The Crouching Thing by Sarah Ellen Parsons

Scully/Doggett

Draw Down the Moon by Jenna Tooms
Happy Girl by MainerIA
Heartsong: The Best of Friends by Julie L. Jekel
They're Here 2 by L. M. Shard
They're Here 3 by L. M. Shard

Scully/Krycek

new ficBaby Girl by Nadia S.
new ficButtons by Nadia S
new ficThe Cocktail Party by Nadia S
new ficDana's Desires 1 - Krycek by Nadia S
new ficDana's Desires 2 - Doggett by Nadia S
new ficDana's Desires 3 - Skinner by Nadia S
new ficDeduction Seduction by Nadia S.
new ficDoggett's Investigation by Nadia S
new ficDoggett's Report by Nadia S
Finding The Past by Bleachy-nii
The Island of X by Tammy D. Aiken-Phillips
new ficKrycek Bites the Bullet by Nadia S
new ficKrycek's Headache by Nadia S
new ficThe Long and Winding Road by Abbey R
One Last Time by Jennifer Cuzzo
The Ratling 1: Swollen Ankles by Tara Leigh Thorne
The Ratling 2: Ambush by Tara Leigh Thorne
The Ratling 3: Bad Coffee by Tara Leigh Thorne
The Ratling 4: Comparing The Martyrs by Tara Leigh Thorne
Secrets by Jennifer Cuzzo
new ficThree Men by Nadia S
new ficTurning the Tables by Nadia S
Will by Helen B

Scully/Pendrell

Every step 1: Just You by JayJay
Every step 2: More than I could ask for 1 by JayJay
Every Step 2: More than I can ask for 2 by JayJay

Mulder/Phoebe

Phoebe Greene's Last Laugh by FatCat
Prelude To An X series by Mad Martha
When Fate Takes A Hand by Madam F

Mulder/Diana

Bathrooms and Other Benefits by Sara B
Bathrooms and Other Benefits 2: More Benefits by Sara B
Bathrooms and Other Benefits 3: Beneficial Dividends by Sara B
Christopher Ryan Scully series by Jori
Coach by Gillian Leigh
Coach II by Gillian Leigh
Home For the Holidays by Neoxphile
Long Day's Journey Into Night by ElleThom
Taking Chances Series by Mulderslady

Mulder/Reyes

Heartsong: The Best of Friends by Julie L. Jekel
We Who Remain Carry On by Neoxphile

Mulder/Marita

Lost Boys and Golden Girls by Martha
Tear a Petal From the Rose by Martha

Krycek/Missy

The Family G-Man by Neoxphile & FelineFemme

Krycek/Samantha

Mrs. Krycek by Xanthe

Skinner/Reyes

Living on Love by Jacquie LaVa

Skinner/Kim

Christmas to Remember by Billie Reid
For Better or Worse by Billie Reid
Here and Now by Billie Reid
Life Happens by Billie Reid
Miracle Baby by Dot
Ready-Made Family by Kyouryoku Senshi
Skinner´┐Żs Heroes by Billie Reid
Total Confusion by Billie Reid

Skinner/Other

Anthony: book one by Clare Skinner
Anthony: book two by Clare Skinner
Anthony: book three by Clare Skinner
Anthony: book four by Clare Skinner
Anthony: book five by Clare Skinner
Peaceful, Easy Feeling by Bonnie Drew
Father's Day by Bonnie Drew
A Quarter Past Three by Bonnie Drew
Downtime by Bonnie Drew

Doggett/Other

Sarah by Mystic Kat
Snow and Mistletoe by Neoxphile

Slash-y Other fics

Father's Day by Ursula m/m slash
Father's Day II by Ursula m/m slash
Folie by Ursula m/m slash
Kitten by Amazon X m/m slash
Kitten II by Amazon X m/m slash
Life From the Ashes by Jo B(m/m slash)
Life's Little Quirks... by Nikita
The Long and Winding Road by Kassandra (m/m slash)
No Greater Gift by KinkyGrrl Diane
Something in the Air by Claire Dobbins (m/m slash)
Sympathy Pains by Bernice
Too Blunt An Instrument by Rose Campion
Trust, Love, and Happiness, Too by Nikita(m/m slash)
Vows by Ursula
We'll Be Okay by MFLuder m/m slash
What We Need Right Now is Trust by Nikita (m/m slash)




There's a Nursery Files challenge on this topic too, so if you'd like to write a fic about characters having kids with others go here for challenge details.


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