These alternate reality fics are written as if season 9 didn't happen.

211 Confession by Samantha
911 by little Starbuck*
Ad Infinitum by Becka F.
After William I-IV by Susan
Ahonis by Jeri
Al Dente by Spookey247
Annual Growth by Norma
Another Day by Frohike
Arms Wide Open by bellefleur
Ballgame by Cathey Scully
Babysitting by Tabby
Birthdays and Other Celebrations by Aeryn D
Bound Together by Psi Fi
A Brand New Life by Angela W
By Falling In And In by Aloysia Virgata (AU post-Deadalive)
Cats and Cross-dressers by beduini
A Chance Encounter by C and Me
Chip Off The Old Block series by mimic117
A Cold Night by Girlie_girl7
Complete by aRcaDIaNFall$
Completion by Romantique
Crafting a Life by Sandy E.
Debrouiller by Tess
Decisions and Consequences by xphilernj
The Deep Untangling by Rae Lynn
The Defender
Defining the Darkness by Belle
Defining Happily Ever After by Belle
A Different Kind Of Christmas by XSketch
The Divine Mr. Jerry Whetmore by Myriss
Don't Go Away by Cathey Scully
Down on Bended Knees by mkai
Draw Down the Moon by Jenna Tooms
Duty by Menagerie
Effloresco by Wing
The Enemy Within by Romantique
Enjoying A Different Kind Of Existence by XSketch
the Everything series by Eral C
Everything That Really Matters by Dyann Zimmerman
Father and Son by Sara H
First Snow by aRcaDIaNFall$
First Steps series:I Le LaitII TechicolorIII Peach FuzzIV The NecklaceV Fresh Air by Alanna
For Myself by Kayla Ariev
Further to Fly by Michelle Kiefer
The G-Man's Guide To Post-Partum Sex by alanna
Go With the Flow by Kel
Going Away by Spookyteacher
Good Mornings by Tabby
The Great Beyond by Buckingham
Happily Ever After by Marta Christjansen
Hero by Becka F.
Home Ec by ArtemisX5
Hurricane Season by beduini and rah
I've Known Them For A Lifetime by little Starbuck*
If Ever Forever by EverLeabae
Intermission by polyhymnia
It's About Time by Jessica
Just Another Day in Paradise by Angela W.
A Leap of Faith by LarissaP
Let's Face the Music and Dance by VirtuesandVices
The Longer I Run by Teliko. x3
Lost Time by AngX
Man To Man Talk series by Girlie_girl7
The Men of My Life by Kirsten_xf
Metamorphasis by Romantique
The MonStar Mystery by FoxfireX
Monster by Aislinn Carter
Mulder's First Father's Day by NST
My Favorite Day by Mish
Namesake by Kelly Moreland
Never Saw Blue Like That by Estrellita
Nothing Important series by Vickie Moseley
OB-GYN by Girlie_girl7
On the Road Again by FoxfireX and Girlie Girl7
One in a Million by Red Badger 83
Opposite Poles by Rory D. Cottrell
Our Happy Beginning by Mezzosoprano
Oxford Reunion by Starbuck_Jayne and Chessity
Pardonner et Oublier by Starbuck
Paternity by aka "Jake"
Party of Three series by Christine Leigh
Perfect Happiness by Lilxgirl
Period of Adjustment by Philemom
Pine-Scented by bcfan
Pride and Joy by Andi Dawkins and Devanie
Priorities by Angel LeeAnn
Pyrrhic Victory by Vickie Moseley
Raleigh by banlu
Raptionis by x-files182
Redefinition by L. N. McKnight
Resolution by abracadabra
Resuming by Norma
Return of the Rat by Psi Fi
Return to Nowhere by Dyann Zimmerman
A Rule I Learned in School by David Hearne
Scout by alanna
Scully's Choice by Kavendish
Scully, NORAD called... by dlynn
Shower Therapy by ArtemisX5
Six Weeks by Angela W
Sneakers by Gillian Leigh
Starkweather series - season one by Scully3776 and SpookyKat
Tempus Fugit (As Does William) by Kimogen
This Life is Not Yet Rated by Rae Lynn
A Thousand Words by Menagerie
The Toddler Files by Unknown
Truth and Unbroken Records by Scully82
Two of a Kind by Girlie_girl7
The Unfinished Universe by Revely
Ways of Leaving the World by Rae Lynn
Will Wonders Never Cease by Gillian Leigh
Worry by Spookyteacher
You Should Be Proud by Faith N.